Pomaznoy Mikhail Yurievich

Pomaznoy Mikhail Yurievich
Post
Bioinformatician
Academic degree
Candidate of Biological Sciences (Ph.D.)
in the Novel team
since 2019
Education
NSU
Projects
NGS Wizard
Interests
Python programming and data analysis, data visualization, GNU/Linux setup and configuration

Links

ResearchGate

List of publications

2021
A metric for evaluating biological information in gene sets and its application to identify co-expressed gene clusters in PBMC
Bennett J, Pomaznoy M, Singhania A, Peters B.
PLoS Comput Biol. 2021;17: e1009459. doi:10.1371/journal.pcbi.1009459
A system-view of Bordetella pertussis booster vaccine responses in adults primed with whole-cell versus acellular vaccine in infancy.
da Silva Antunes R, Soldevila F, Pomaznoy M, Babor M, Bennett J, Tian Y, et al.
JCI Insight. 2021;6. doi:10.1172/jci.insight.141023
HLA-DR Marks Recently Divided Antigen-Specific Effector CD4 T Cells in Active Tuberculosis Patients
Tippalagama R, Singhania A, Dubelko P, Lindestam Arlehamn CS, Crinklaw A, Pomaznoy M, et al.
JI. 2021;207: 523–533. doi:10.4049/jimmunol.2100011
2020
The Challenge of Distinguishing Cell-Cell Complexes from Singlet Cells in Non-Imaging Flow Cytometry and Single-Cell Sorting
Burel JG, Pomaznoy M, Lindestam Arlehamn CS, Seumois G, Vijayanand P, Sette A, et al.
Cytometry A. 2020;97: 1127–1135. doi:10.1002/cyto.a.24027
Quantitative and Qualitative Perturbations of CD8+ MAITs in Healthy Mycobacterium tuberculosis-Infected Individuals
Pomaznoy M, Kuan R, Lindvall M, Burel JG, Seumois G, Vijayanand P, et al.
Immunohorizons. 2020;4: 292–307. doi:10.4049/immunohorizons.2000031
2019
Host Transcriptomics as a Tool to Identify Diagnostic and Mechanistic Immune Signatures of Tuberculosis
Burel JG, Babor M, Pomaznoy M, Lindestam Arlehamn CS, Khan N, Sette A, et al.
Front Immunol. 2019;10: 221. doi:10.3389/fimmu.2019.00221
Circulating T cell-monocyte complexes are markers of immune perturbations
Burel JG, Pomaznoy M, Lindestam Arlehamn CS, Weiskopf D, da Silva Antunes R, Jung Y, et al.
Elife. 2019;8. doi:10.7554/eLife.46045
dentifying inaccuracies in gene expression estimates from unstranded RNA-seq data
Pomaznoy M, Sethi A, Greenbaum J, Peters B.
Sci Rep. 2019;9: 16342. doi:10.1038/s41598-019-52584-w
2018
 GOnet: a tool for interactive Gene Ontology analysis
Pomaznoy M, Ha B, Peters B.
BMC Bioinformatics. 2018;19: 470. doi:10.1186/s12859-018-2533-3
Pomaznoy Mikhail Yurievich

Links

ResearchGate

Pomaznoy Mikhail Yurievich

Post
Bioinformatician
Academic degree
Candidate of Biological Sciences (Ph.D.)
in the Novel team
since 2019
Education
NSU
Projects
NGS Wizard
Interests
Python programming and data analysis, data visualization, GNU/Linux setup and configuration

List of publications

2021
A metric for evaluating biological information in gene sets and its application to identify co-expressed gene clusters in PBMC
Bennett J, Pomaznoy M, Singhania A, Peters B.
PLoS Comput Biol. 2021;17: e1009459. doi:10.1371/journal.pcbi.1009459
A system-view of Bordetella pertussis booster vaccine responses in adults primed with whole-cell versus acellular vaccine in infancy.
da Silva Antunes R, Soldevila F, Pomaznoy M, Babor M, Bennett J, Tian Y, et al.
JCI Insight. 2021;6. doi:10.1172/jci.insight.141023
HLA-DR Marks Recently Divided Antigen-Specific Effector CD4 T Cells in Active Tuberculosis Patients
Tippalagama R, Singhania A, Dubelko P, Lindestam Arlehamn CS, Crinklaw A, Pomaznoy M, et al.
JI. 2021;207: 523–533. doi:10.4049/jimmunol.2100011
2020
The Challenge of Distinguishing Cell-Cell Complexes from Singlet Cells in Non-Imaging Flow Cytometry and Single-Cell Sorting
Burel JG, Pomaznoy M, Lindestam Arlehamn CS, Seumois G, Vijayanand P, Sette A, et al.
Cytometry A. 2020;97: 1127–1135. doi:10.1002/cyto.a.24027
Quantitative and Qualitative Perturbations of CD8+ MAITs in Healthy Mycobacterium tuberculosis-Infected Individuals
Pomaznoy M, Kuan R, Lindvall M, Burel JG, Seumois G, Vijayanand P, et al.
Immunohorizons. 2020;4: 292–307. doi:10.4049/immunohorizons.2000031
2019
Host Transcriptomics as a Tool to Identify Diagnostic and Mechanistic Immune Signatures of Tuberculosis
Burel JG, Babor M, Pomaznoy M, Lindestam Arlehamn CS, Khan N, Sette A, et al.
Front Immunol. 2019;10: 221. doi:10.3389/fimmu.2019.00221
Circulating T cell-monocyte complexes are markers of immune perturbations
Burel JG, Pomaznoy M, Lindestam Arlehamn CS, Weiskopf D, da Silva Antunes R, Jung Y, et al.
Elife. 2019;8. doi:10.7554/eLife.46045
dentifying inaccuracies in gene expression estimates from unstranded RNA-seq data
Pomaznoy M, Sethi A, Greenbaum J, Peters B.
Sci Rep. 2019;9: 16342. doi:10.1038/s41598-019-52584-w
2018
 GOnet: a tool for interactive Gene Ontology analysis
Pomaznoy M, Ha B, Peters B.
BMC Bioinformatics. 2018;19: 470. doi:10.1186/s12859-018-2533-3